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Publications 2011


Scientific Journals:

  1. J. Speck, K.M. Arndt, K.M. Muller: Efficient phage display of intracellularly folded proteins mediated by the TAT pathway. Protein Eng Des Sel, 2011; 24 (6): 473-484.
  2. J. Speck, S.C. Stebel, K.M. Arndt, K.M. Muller: Nucleotide exchange and excision technology DNA shuffling and directed evolution. Methods Mol Biol, 2011; 687: 333-344.
  3. L. Rizzini, J.J. Favory, C. Cloix, D. Faggionato, A. O'Hara, E. Kaiserli, R. Baumeister, E. Schafer, F. Nagy, G.I. Jenkins, R. Ulm: Perception of UV-B by the Arabidopsis UVR8 Protein. Science, 2011; 332 (6025): 103-106.
  4. N. Wanner, F. Noutsou, R. Baumeister, G. Walz, T.B. Huber, E. Neumann-Haefelin: Functional and spatial analysis of C. elegans SYG-1 and SYG-2, orthologs of the Neph/nephrin cell adhesion module directing selective synaptogenesis. Plos One, 2011; 6 (8): e23598-e23598.
  5. T.O. Lankisch, J. Metzger, J. Siwy, T.J.Weismuller, A.S. Schneider, K. Thedieck, R. Baumeister, J. Wedemeyer: Bile Proteomic Profiles Differentiate Cholangiocarcinoma from Primary Sclerosing Cholangitis and Choledocholithiasis. Hepatology, 2011; 53 (3): 875-884.
  6. C. Has, D. Castiglia, M. Del Rio, M. Garcia Diez, E. Piccinni, D. Kiritsi, J. Kohlhase, P. Itin, L. Martin, J. Fischer, G. Zambruno, L. Bruckner-Tuderman: Kindler syndrome: Extension of FERMT1 mutational spectrum and natural history. Hum Mutat., 2011; 32 (11): 1204-1212.
  7. C. Gruber, I.K. Gratz, E.M. Murauer, L. Bruckner-Tuderman, G. Meneguzzi, H. Hintner, J.W. Bauer: Spliceosome-Mediated RNA Trans-Splicing Facilitates Targeted Delivery of Suicide Genes to Cancer Cells. Mol Cancer Ther, 2011; 10 (2): 223-241.
  8. D. Kiritsi, J.S. Kern, H. Schumann, J. Kohlhase, C. Has, L. Bruckner-Tuderman: Molecular mechanisms of phenotypic variability in junctional epidermolysis bullosa. J Med Genet., 2011; 48 (7): 450-457.
  9. G. Di Zenzo, S. Thoma-Uszynski, V. Calabresi, L. Fontao, S.C. Hofmann, J.P. Lacour, F. Sera, L. Bruckner-Tuderman, G. Zambruno, L. Borradori, M. Hertl: Demonstration of epitope-spreading phenomena in bullous pemphigoid: results of a prospective multicenter study. J Invest Dermatol., 2011; 131 (11): 2271-2280.
  10. L.Y. Chiang, K. Poole, B.E. Oliveira, N. Duarte, Y.A. Sierra, L. Bruckner-Tuderman, M. Koch, J. Hu, G.R. Lewin: Laminin-332 coordinates mechanotransduction and growth cone bifurcation in sensory neurons. Nat Neurosci., 2011; 14 (8): 993-1000.
  11. M. Pigors, D. Kiritsi, S. Krumpelmann, I. Hausser, L. Bruckner-Tuderman, C. Has: Lack of plakoglobin leads to lethal congenital epidermolysis bullosa: a novel clinico-genetic entity. Hum Mol Genet, 2011; 20 (9): 1811-1819.
  12. P.C. van den Akker, M.F. Jonkman, T. Rengaw,  L. Bruckner-Tuderman, C. Has, J.W. Bauer, A. Klausegger, G. Zambruno, D. Castiglia, J.E. Mellerio, J.A. McGrath, A.J. van Essen, R.M. Hofstra, M.A. Swertz: The international dystrophic epidermolysis bullosa patient registry: an online database of dystrophic epidermolysis bullosa patients and their COL7A1 mutations. Hum Mutat., 2011; 32 (10): 1100-1107.
  13. S.A. Watt, C. Pourreyron, K. Purdie, C. Hogan, C.L. Cole, N. Foster, N. Pratt, J.C. Bourdon, V. Appleyard, K. Murray, A.M. Thompson, X. Mao, C. Mein, L. Bruckner-Tuderman, A. Evans, J.A. McGrath, C.M. Proby, J. Foerster, I.M. Leigh, A.P. South: Integrative mRNA profiling comparing cultured primary cells with clinical samples reveals PLK1 and C20orf20 as therapeutic targets in cutaneous squamous cell carcinoma. Oncogene, 2011; 30 (46): 4666-4677.
  14. S.C. Hofmann, V. Saborowski, S. Lange, W.V. Kern, L. Bruckner-Tuderman, S. Rieg: Expression of innate defense antimicrobial peptides in hidradenitis suppurativa. J Am Acad Dermatol., 2011; [Epub ahead of print].
  15. W. von Bartenwerffer, C. Has, M.J. Arin, I. Tantcheva-Poór, A. Kreuter, K. Kremer, T. Arshah, M. Hoffmann, S.A. Eming, J. Kohlhase, T. Krieg,  L. Bruckner-Tuderman, K. Hartmann: Mild recessive dystrophic epidermolysis bullosa associated with two compound heterozygous COL7A1 mutations. Eur J Dermatol., 2011; 21 (2): 170-172.
  16. W. Nishie, D. Kiritsi, A. Nyström, S.C. Hofmann, L. Bruckner-Tuderman: Dynamic interactions of epidermal collagen XVII with the extracellular matrix: laminin 332 as a major binding partner. Am J Pathol., 2011; 179 (2): 829-837.
  17. Y. He, P. Esser, A. Heinemann, L. Bruckner-Tuderman, C. Has: Kindlin-1 and-2 Have Overlapping Functions in Epithelial Cells Implications for Phenotype Modification. Am J Pathol, 2011; 178 (3): 975-982.
  18. Y. He, P. Esser, V. Schacht, L. Bruckner-Tuderman, C. Has: Role of Kindlin-2 in Fibroblast Functions: Implications for Wound Healing. J Invest Dermatol, 2011; 131 (1): 245-256.
  19. Z. Kopecki, R.M. Arkell, X.L. Strudwick, M. Hirose, R.J. Ludwig, J.S. Kern, L. Bruckner-Tuderman, D. Zillikens, D.F. Murrell, A.J. Cowin: Overexpression of the Flii gene increases dermal-epidermal blistering in an autoimmune ColVII mouse model of epidermolysis bullosa acquisita. J Pathol., 2011; 225 (3): 401-413.
  20. A. Heinemann, Y. He, M. Börries, H. Busch, L. Bruckner-Tuderman, C. Has: Induction of Phenotype Modifying Cytokines by FERMT1 Mutations. Hum Mutat, 2011; 32 (4): 397-406.
  21. J. Bachmann, A. Raue, M. Schilling, H. Busch, J. Timmer, U. Klingmüller: Division of Labor by Dual Feedback Regulators Controls JAK2/STAT5 Signaling over Broad Ligand Range. Mol Syst Biol, 2011; 7: 516.
  22. N. Bhattacharya, S. Diener, S. Häbe, H. Busch, A. Habermann, M. Mertens: Nurse-like cells show deregulated expression of genes involved in immunocompetence. Brit J Haematol, 2011; 154(3): 349-356.
  23. S. Mesecke, D. Urlaub, H. Busch, R. Eils, C. Watzl: Integration of Activating and Inhibitory Receptor Signaling by Regulated Phosphorylation of Vav1 in Immune Cells. Science Signaling, 2011; 4 (175): ra36.
  24. V.Y. Leung, B. Gao, K.K. Leung, I.G. Melhado, S.L. Wynn, T.Y. Au, N.W. Dung, J.Y. Lau, A.C. Mak, D. Chan, K.S. Cheah: SOX9 Governs Differentiation Stage-Specific Gene Expression in Growth Plate Chondrocytes via Direct Concomitant Transactivation and Repression. Plos Genet, 2011; 7 (11): e1002356.
  25. A. Schreiber, Z. Zaitseva, Y. Thomann, T. Thomann, J. Dengjel, R. Hanselmann, S.M. Schiller: Protein yoctowell nanoarchitectures: assembly of donut shaped protein containers and nanofibres. Soft Matter, 2011; 7 (6): 2875-2878.
  26. B. Preuss, C. Berg, J. Dengjel, S. Stevanovic, R. Klein: Relevance of the inner mitochondrial membrane enzyme F(1) F(0) -ATPase as an autoantigen in autoimmune liver disorders. Liver Int, 2011: 32 (2): 249-257.
  27. J. Nylandsted, A.C. Becker, J. Bunkenborg, J.S. Andersen, J. Dengjel, M. Jäättelä: ErbB2-associated changes in the lysosomal proteome. Proteomics, 2011; 11(14): 2830-2838. http://10.1002/pmic.201000734
  28. L. Bozzacco, H. Yu, H.A. Zebroski, J. Dengjel, H. Deng, S. Mojsov, R.M. Steinman: Mass Spectrometry Analysis and Quantitation of Peptides Presented on the MHC II Molecules of Mouse Spleen Dendritic Cells. J Proteome Res, 2011; 10 (11): 5016-5030.
  29. M. Ndhlovu, P. Preuss, J. Dengjel, S.M. Weiner, R. Klein: Identification of alpha-tubulin as an autoantigen recognized by sera from patients with neuropsychiatric systemic lupus erythematosus. Brain Behav Immun, 2011; 25 (2): 279-285.
  30. M. Zarei, A. Sprenger, F. Metzger, C. Gretzmeier, J. Dengjel: Comparison of ERLIC-TiO2, HILIC-TiO2 and SCX-TiO2 for global phosphoproteomics approaches. J Proteome Res, 2011; 10(8): 3474-3483.
  31. A. Brockschmidt, A. Filippi, I.P. Charbel, M. Nelles, H. Urbach, N. Eter, W. Driever, R.G. Weber: Neurologic and ocular phenotype in Pitt-Hopkins syndrome and a zebrafish model. Hum Genet, 2011; 130 (5): 645-655.
  32. M. Iwafuchi-Doi, Y. Yoshida, D. Onichtchouk, M. Leichsenring, W. Driever, T. Takemoto, M. Uchikawa, Y. Kamachi, H. Kondoh: The Pou5f1/Pou3f-dependent but SoxB-independent regulation of conserved enhancer N2 initiates Sox2 expression during epiblast to neural plate stages in vertebrates. Developmental Biology, 2011; 352 (2): 354-366.
  33. T.L. Tay, O. Ronneberger, S. Ryu, R. Nitschke, W. Driever: Comprehensive catecholaminergic projectome analysis reveals single-neuron integration of zebrafish ascending and descending dopaminergic systems. Nature Communications, 2011; 2: 171.
  34. B. Finsen, T. Owens: Innate immune responses in central nervous system inflammation. Febs Lett, 2011; 585 (23): 3806-3812.
  35. K.L. Lambertsen, T. Deierborg, R. Gregersen, H.H. Nielsen, F.F. Johansen, F. Flemming, B. Finsen: Differences in Origin of Reactive Microglia in Bone Marrow Chimeric Mouse and Rat After Transient Global Ischemia. Journal of Neuropathology and Experimental Neurology, 2011; 70 (6): 481-494
  36. D. Neess, M. Bloksgaard, S. Bek, A.B. Marcher, I.C. Elle, T. Helledie, M. Due, V. Pagmantidis, B. Finsen, J. Wilbertz, M. Kruhoffer, N. Faergeman, S. Mandrup: Disruption of the acyl-CoA-binding protein gene delays hepatic adaptation to metabolic changes at weaning. J Biol Chem, 2011; 286 (5): 3460-3472
  37. H. Hvilsted Nielsen, H. Toft-Hansen, KL. Lambertsen, T. Owens, B. Finsen: Stimulation of adult oligodendrogenesis by myelin-specific T cells. Am J Pathol, 2011; 179 (4): 2028-2041.
  38. J. Karschau, C. de Almeida, S. Miller, C. Grebogi, A.P.S. de Moura: A Matter of Life or Death: Modeling DNA Damage and Repair in Bacteria. Biophys J, 2011; 100 (4): 814-821.
  39. K. Guseva, M. Thiel, I. Booth, S. Miller, C. Grebogi, A. de Moura: Collective response of self-organized clusters of mechanosensitive channels. Phys Rev E, 2011; 83 (2 Pt 1): 020901-020901.
  40. L.A. Huang, Y.C. Lai, C. Grebogi: Characteristics of level-spacing statistics in chaotic graphene billiards. Chaos, 2011; 21 (1): 013102.
  41. L. Sommerlade, M. Thiel, B. Platt, A. Plano, G. Riedel, C. Grebogi, J. Timmer, B. Schelter: Inference of Granger causal time-dependent influences in noisy multivariate time series. Journal of Neuroscience Methods, 2011 (online); 2012; 203 (1): 173-185.
  42. M. Richard, M. Fryett, S. Miller, I. Booth, C. Grebogi, A. Moura: Optimality in DNA repair. J Theor Biol, 2011; 292: 39-43.
  43. W.X. Wang, R. Yang R, V. Kovanis, C. Grebogi: Predicting Catastrophes in Nonlinear Dynamical Systems by Compressive Sensing. Phys Rev Lett, 2011; 106 (15): 154101.
  44. W.X. Wang, X.A. Ni, Y.C. Lai, C. Grebogi: Pattern formation, synchronization, and outbreak of biodiversity in cyclically competing games. Phys Rev E, 2011; 83 (1): 011917.
  45. R. Yang, L. Huang, Y.C. Lai, C. Grebogi: Abnormal electron paths induced by Klein tunneling in graphene quantum point contacts. Phys Rev B, 2011; 84 (3): 035426.
  46. R. Yang, L. Huang, Y.C. Lai, C. Grebogi: Quantum chaotic scattering in graphene systems. Epl-europhys Lett, 2011; 94 (4): 40004.
  47. A. Pernia-Andrade, P. Jonas: The Multiple Faces of RIM. Neuron, 2011; 69 (2): 185-187.
  48. A.J. Kunwar, M. Rickmann, B. Backofen, S.M. Browski, K. Krieglstein, G.F. von Mollard: Lack of the endosomal SNAREs vti1a and vti1b led to significant impairments in neuronal development. P Natl Acad Sci Usa, 2011; 108 (6): 2575-2580.
  49. B. Spittau, K. Krieglstein: Klf10 and Klf11 as mediators of TGF-beta superfamily signaling. Cell Tissue Res, 2011; 347 (1): 65-72.
  50. C. Boonla, K. Krieglstein, S. Bovornpadungkitti, F. Strutz, B. Spittau, C. Predanon C, P. Tosukhowong: Fibrosis and evidence for epithelial-mesenchymal transition in the kidneys of patients with staghorn calculi. Bju Int, 2011; 108 (8): 1336-1345.
  51. K. Krieglstein, F. Zheng, K. Unsicker, C. Alzheimer: More than being protective: functional roles for TGF-ß/activin signaling pathways at central synapses. Trends Neurosci., 2011; 34 (8): 421-429.
  52. N. Osterberg, M. Wiehle, O. Oehlke, S. Heidrich, C. Xu, K. Krieglstein, E. Roussa: Sim1 Is a Novel Regulator in the Differentiation of Mouse Dorsal Raphe Serotonergic Neurons. Plos One, 2011; 6 (4): e19239.
  53. S. Heermann, J. Schmucker, U. Hinz, M. Rickmann, T. Unterbarnscheidt, M.H. Schwab, K. Krieglstein: Neuregulin 1 Type III/ErbB Signaling Is Crucial for Schwann Cell Colonization of Sympathetic Axons. Plos One, 2011; 6 (12): e28692-e28692.
  54. A.C. Eitelhuber, S. Warth, T. Kurosaki, V. Heissmeyer, D. Krappmann: Dephosphorylation of Carma1 by PP2A negatively regulates T-cell activation. Embo J, 2011; 30 (3): 594-605.
  55. A. Limnander, P. Depeille, J. Liou, T. Kurosaki, A. Weiss: STIM1, PKC-delta and RasGRP set a threshold for proapoptotic Erk signaling during B cell development. Nat Immunol, 2011; 12 (5): 425-433.
  56. K. Kometani, T. Yamada, Y. Sasaki, T. Yokosuka, T. Saito, K. Rajewsky, M. Ishiai, M. Hikida, T. Kurosaki: CIN85 drives B cell responses by linking BCR signals to the canonical NF-{kappa}B pathway. J Exp Med, 2011; 208 (7): 1447-1457.
  57. M. Kitano, S. Moriyama, Y. Ando, M. Hikida, Y. Mori, T. Kurosaki, T. Okada: Bcl6 protein expression shapes pre-germinal center B cell dynamics and follicular helper T cell heterogeneity. Immunity, 2011; 34 (6): 961-972.
  58. M. Matsumoto, Y. Fujii, A. Baba, M. Hikida, T. Kurosaki, Y. Baba: The calcium sensors STIM1 and STIM2 control B cell regulatory function through interleukin-10 production. Immunity, 2011; 34 (5): 703-714.
  59. M.N. Shuaibu, M.S. Cherif, T. Kurosaki, G.K. Helegbe, K. Hirayama: Effect of nanoparticle coating on the immunogenicity of plasmid DNA vaccine encoding P. yoelii MSP-1 C-terminal. Vaccine, 2011; 29 (17): 3239-3247.
  60. S. Song, C. Chew, B.M. Dale, D. Traum, J. Peacock, T. Yamazaki, R. Clynes, T. Kurosaki, S. Greenberg: A Requirement for the p85 PI3K Adapter Protein BCAP in the Protection of Macrophages from Apoptosis Induced by Endoplasmic Reticulum Stress. J Immunol, 2011; 187 (2): 619-625.
  61. T. Kurosaki: Regulation of BCR signaling. Mol Immunol, 2011; 48 (11): 1287-1291.
  62. T. Yasuda, K. Kometani, N. Takahashi, Y. Imai, T. Kurosaki: ERKs Induce Expression of the Transcriptional Repressor Blimp-1 and Subsequent Plasma Cell Differentiation. Science Signaling, 2011; 4 (169): ra25.
  63. Y. Baba, T. Kurosaki: Impact of Ca(2+) signaling on B cell function. Trends Immunol, 2011; 32 (12): 589-594.
  64. L. Katsir, K.A. Davies, D.C. Bergmann, T. Laux: Peptide Signaling in Plant Development. Curr Biol, 2011; 21 (9): R356-R364.
  65. M. Ueda, Z.J. Zhang, T. Laux: Transcriptional Activation of Arabidopsis Axis Patterning Genes WOX8/9 Links Zygote Polarity to Embryo Development. Dev Cell, 2011; 20 (2): 264-270.
  66. Z.J. Zhang, T. Laux: The asymmetric division of the Arabidopsis zygote: from cell polarity to an embryo axis. Sex Plant Reprod, 2011; 24: 161-169.
  67. A. Joshi, Y. Van de Peer, T. Michoel: Structural and functional organization of RNA regulons in the posttranscriptional regulatory network of yeast. Nucleic Acids Research, 2011; 39 (21): 9108-9117. DOI:10.1093/nar/gkr661
  68. J. Qi, T. Michoel, G. Butler: Applying Linear Models to Learn Regulation Programs in a Transcription Regulatory Module Network. Lecture Notes in Computer Science, 2011, Volume 6623/2011: 37-47.
  69. P. Audenaert, T. Van Parys, F. Brondel, M. Pickavet, P. Demeester, Y. Van de Peer, T. Michoel: CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. Bioinformatics, 2011; 27(11): 1587-1588.
  70. T. Michoel, A. Joshi, B. Nachtergaele, Y. Van de Peer: Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks. Molecular BioSystems, 2011; 7(10): 2769-2778. DOI: 10.1039/c1mb05241a
  71. A. Shariff, R.F. Murphy, G. Rohde: Automated Estimation of Microtubule Model Parameters from 3-D Live Cell Microscopy Images. Proceedings of the 2011 IEEE International Symposium on Biomedical Imaging (ISBI 2011), 2011, 1330-1333.
  72. R.F. Murphy: CellOrganizer: Image-derived Models of Subcellular Organization and Protein Distribution. Methods in Cell Biology, 2011; 79 (5): 383-391.
  73. R.F. Murphy: An active role for machine learning in drug development. Nat Chem Biol, 2011; 7 (6): 327-330.
  74. T.H. Lin, Z. Bar-Joseph, R.F. Murphy: Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs. Research in Computational Molecular Biology, 2011; 6577: 204-221.
  75. T.H. Lin, R.F. Murphy, Z. Bar-Joseph: Discriminative Motif Finding for Predicting Protein Subcellular Localization. Ieee Acm T Comput Bi, 2011; 8 (2): 441-451
  76. T. Peng, R.F. Murphy: Image-derived, Three-dimensional Generative Models of Cellular Organization. Cytom Part A, 2011; 79A (5): 383-391.
  77. I. Wolf, S. Kircher, E. Fejes, L. Kozma-Bognar, E. Schafer, F. Nagy, E. Adam: Light-Regulated Nuclear Import and Degradation of Arabidopsis Phytochrome-A N-Terminal Fragments. Plant and Cell Physiology, 2011; 52 (2): 361-372.
  78. Y. Butenko, N. Ohad: Polycomb-group mediated epigenetic mechanisms through plant evolution. Biochim. Biophys. Acta, 2011; 1809 (8): 395-406. doi:10.1016/j.bbagrm.2011.05.013
  79. A. Doucet, C.M. Overall: Amino-Terminal Oriented Mass Spectrometry of Substrates (ATOMS) N-Terminal Sequencing of Proteins and Proteolytic Cleavage Sites by Quantitative Mass Spectrometry. Method Enzymol, 2011; 501: 275-293.
  80. A. Doucet, C.M. Overall: Broad Coverage Identification of Multiple Proteolytic Cleavage Site Sequences in Complex High Molecular Weight Proteins Using Quantitative Proteomics as a Complement to Edman Sequencing. Mol Cell Proteomics, 2011; 10 (5): 10.1074/mc.
  81. O. Schilling, P.F. Huesgen, O. Barre, U.A.D. Keller, C.M. Overall: Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry. Nat Protoc, 2011; 6 (1): 111-120.
  82. P.F. Huesgen, C.M. Overall: N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification. Physiol Plantarum, 2011; 145 (1): 5-17.
  83. P.F. Lange, P.F. Huesgen, C.M. Overall: TopFIND 2.0-linking protein termini with proteolytic processing and modifications altering protein function. Nucleic Acids Res, 2011; 40:351-361.
  84. Y.M. Lou, P.C. McDonald, A. Oloumi, C.M. Overall, F. Carta, S. Dedhar: Targeting Tumor Hypoxia: Suppression of Breast Tumor Growth and Metastasis by Novel Carbonic Anhydrase IX Inhibitors. Cancer Res, 2011; 71 (9): 3364-3376.
  85. M. Lucas, I.A. Paponov, K. Palme, M.J. Bennett: SHORT-ROOT Regulates Primary, Lateral, and Adventitious Root Development in Arabidopsis. Plant Physiol, 2011; 155 (1): 384-398.
  86. Q. Chen, J. Sun, Q. Zhai, W. Zhou, L. Qi, L. Xu, B. Wang, R. Chen, H. Jiang, J. Qi, X. Li, K. Palme, C. Li: The Basic Helix-Loop-Helix Transcription Factor MYC2 Directly Represses PLETHORA Expression during Jasmonate-Mediated Modulation of the Root Stem Cell Niche in Arabidopsis. Plant Cell, 2011; 23 (9): 3335-3352.
  87. A. Buettner-Mainik, J. Parsons, A. Hartmann, S. Lamer, A. Schlosser, R. Reski: Production of biologically active recombinant human factor H in Physcomitrella. Plant Biotechnol J, 2011; 9 (3): 373-383.
  88. C. C. Colpitts, S.S. Kim, S.E. Posehn, C. Jepson, S.Y. Kim, G. Wiedemann, R. Reski, A.G.H. Wee, C.J. Douglas, D.-Y. Suh: PpASCL, a moss ortholog of anther-specific chalcone synthase-like enzymes, is a hydroxyalkylpyrone synthase involved in an evolutionarily conserved sporopollenin biosynthesis pathway. New Phytologist, 2011; 192 (4): 855-868.
  89. E. Lang, S. Mueller, S.N. Hoernstein, R. Reski: Simultaneous isolation of pure and intact chloroplasts and mitochondria from moss as the basis for sub-cellular proteomics. Plant Cell Rep, 2011; 30 (2): 205-215.
  90. M.E. Horn, G. Hahne, R. Reski: Plant biotechnology in support of the Millennium Goals II. Plant Cell Rep, 2011; 30 (5): 677-679.
  91. O. Saleh, N. Issman, R. Stav, R. Reski, W. Frank, T. Arazi: MicroRNA534a control of BLADE-ON-PETIOLE 1 and 2 mediates juvenile-to-adult gametophyte transition in Physcomitrella patens. Plant J, 2011; 65 (4): 661-674.
  92. A. Raue, C. Kreutz, T. Maiwald, U. Klingmuller, J. Timmer: Addressing parameter identifiability by model-based experimentation. Iet Syst Biol, 2011; 5 (2): 120-130.
  93. A. Schad, J. Timmer, M. Roth: A unified approach to the helioseismic inversion problem of the solar meridional flow from global oscillations. Astrophys J, 2011; 743: 97.
  94. B. Schelter, H. Feldwisch-Drentrup, M. Ihle, A. Schulze-Bonhage, J. Timmer: Seizure prediction in epilepsy: from circadian concepts via probabilistic forecasting to statistical evaluation. Conf Proc IEEE Eng Med Biol Soc, 2011; 2011: 1624-1627.
  95. B. Schelter, L. Sommerlade, B. Platt, A. Plano, M. Thiel, J. Timmer: Multivariate analysis of dynamical processes with applications to the neurosciences. Conf Proc IEEE Eng Med Biol Soc, 2011; 2011: 5931-5934.
  96. H. Feldwisch-Drentrup, A. Schulze-Bonhage, J. Timmer, B. Schelter: Statistical validation of event predictors: a comparative study based on the field of seizure prediction. Phys Rev E Stat Nonlin Soft Matter Phys., 2011; 83 (6 Pt 2): 066704.
  97. H. Feldwisch-Drentrup, M. Ihle, M. L. V. Quyen, C. Teixeira, A. Dourado, J. Timmer, F. Sales, V. Navarro, A. Schulze-Bonhage, B. Schelter: Anticipating the unobserved: Prediction of subclinical seizures. Epilepsy Behav, 2011; 22 Suppl 1: S119-S126.
  98. H. Feldwisch-Drentrup, M. Staniek, A. Schulze-Bonhage, J. Timmer, H. Dickten, C.E. Elger, B. Schelter, K. Lehnertz: Identification of preseizure States in epilepsy: a data-driven approach for multichannel EEG recordings. Front Comput Neurosci., 2011; 5: 32.
  99. J. Rausenberger, A. Tscheuschler, W. Nordmeier, F. Wuest, J. Timmer, E. Schaefer, C. Fleck, A. Hiltbrunner: Photoconversion and Nuclear Trafficking Cycles Determine Phytochrome A’s Response Profile to Far-Red Light. Cell, 2011; 146 (5): 813-825.
  100. L. Sommerlade, F. Amtage, L. Lapp, B. Hellwig, C.H. Lucking, J. Timmer, B. Schelter: On the estimation of the direction of information flow in networks of dynamical systems. J Neurosci Meth, 2011; 196 (1): 182-189.
  101. M.J. van der Bom, J.P.W. Pluim, J. Timmer, L.W. Bartels: Registration of 2D x-ray images to 3D MRI by generating pseudo-CT data. Phys Med Biol, 2011; 56 (4): 1031-1043.
  102. M. Lenz, M. Musso, Y. Linke, O. Tüscher, J. Timmer, C. Weiller, B. Schelter: Joint EEG/fMRI state space model for the detection of directed interactions in human brains-a simulation study. Physiol Meas., 2011; 32 (11): 1725-1736.
  103. M. Reinhard, M. Roth, B. Guschlbauer, M. Czosnyka, J. Timmer, C. Weiller, A. Hetzel: The course of dynamic cerebral autoregulation during cervical internal carotid artery occlusion. Neurol Res, 2011; 33 (9): 921-926.
  104. M. Warncke, M. Buchner, J. Timmer, H. Veelken: Control of the specificity of T cell-mediated anti-idiotype immunity by natural regulatory T cells. Cancer Immunol Immun, 2011; 60 (1): 49-60.
  105. P. Christopoulos, D. Pfeifer, K. Bartholome, M. Follo, J. Timmer, H. Veelken: Definition and characterization of the systemic T-cell dysregulation in untreated indolent B-cell lymphoma and very early CLL. Blood, 2011; 117 (14): 3836-3846.
  106. R. Schlatter, N. Philippi, G. Wangorsch, R. Pick, O. Sawodny, C. Borner, J. Timmer, M. Ederer, T. Dandekar: Integration of Boolean models exemplified on hepatocyte signal transduction. Brief Bioinform, 2011.
  107. T. Maiwald, J. Blumberg, J. Timmer, A. Schulze-Bonhage: Are prodromes preictal events? A prospective PDA-based study. Epilepsy Behav., 2011; 21 (2): 184-188.
  108. V. Raia, A. Raue, J. Timmer, U. Klingmuller: Dynamic Mathematical Modeling of IL13-Induced Signaling in Hodgkin and Primary Mediastinal B-Cell Lymphoma Allows Prediction of Therapeutic Targets. Cancer Res, 2011; 71 (3): 693-704
  109. D. Hershkovitz, Y. Gross, O. Sarig, J. Uitto, E. Sprecher: Functional Characterization of SAMD9, a Protein Deficient in Normophosphatemic Familial Tumoral Calcinosis. J Invest Dermatol, 2011; 131 (3): 662-669.
  110. J.E. Lai-Cheong, J.A. McGrath, J. Uitto: Revertant mosaicism in skin: natural gene therapy. Trends Mol Med, 2011; 17 (3): 140-148.
  111. J. Uitto: Regenerative Medicine for Skin Diseases: iPS Cells to the Rescue. J Invest Dermatol, 2011; 131 (4): 812-814.
  112. K. Tamai, T. Yamazaki, T. Chino, M. Ishii, J. Uitto, Y. Kaneda: PDGFR alpha-positive cells in bone marrow are mobilized by high mobility group box 1 (HMGB1) to regenerate injured epithelia. P Natl Acad Sci Usa, 2011; 108 (16): 6609-6614.
  113. L. Remvig, R.H. Engelbert, B. Berglund, J. Uitto, L.L. Wekre: Need for a consensus on the methods by which to measure joint mobility and the definition of norms for hypermobility that reflect age, gender and ethnic-dependent variation: is revision of criteria for joint hypermobility syndrome and Ehlers-Danlos syndrome hypermobility type indicated? Rheumatology, 2011; 50 (6): 1169-1171.
  114. M. El-Domyati, T.S. El-Ammawi, M.G. Mahoney, J. Uitto: Effects of the Nd:YAG 1320-nm laser on skin rejuvenation: Clinical and histological correlations. Journal of Cosmetic and Laser Therapy, 2011; 13 (3): 98-106.
  115. M. El-Domyati, T.S. El-Ammawi, O. Moawad, W. Medhat, M.G. Mahoney, J. Uitto: Intense pulsed light photorejuvenation: a histological and immunohistochemical evaluation. J Drugs Dermatol, 2011; 10 (11): 1246-1252.
  116. M. El-Domyati, T.S. El-Ammawi, W. Medhat, O. Moawad, J. Uitto: Radiofrequency facial rejuvenation: Evidence-based effect. J Am Acad Dermatol, 2011; 64 (3): 524-535.
  117. Q.L. Li, J. Uitto: Expression of the Abca-subfamily of genes in Abcc6(-/-) mice - upregulation of Abca4. Exp Dermatol, 2011; 20 (5): 452-454.
  118. Q. Li, M. Frank, B.V. Thisse, J. Uitto: Zebrafish: A Model System to Study Heritable Skin Diseases. J Invest Dermatol, 2011; 131 (3): 565-571.
  119. Q. Li, S. Sadowski, J. Uitto: Angioid Streaks in Pseudoxanthoma Elasticum: Role of the p.R1268Q Mutation in the ABCC6 Gene. J Invest Dermatol, 2011; 131 (3): 782-785.
  120. V. Alexeev, J. Uitto, O. Igoucheva: Gene expression signatures of mouse bone marrow-derived mesenchymal stem cells in the cutaneous environment and therapeutic implications for blistering skin disorder. Cytotherapy, 2011; 13 (1): 30-45.




Scientific Staff

  1. S. Réjiba, L.H. Reddy, C. Bigand, C. Parmentier, P. Couvreur, A. Hajri: Squalenoyl gemcitabine nanomedicine overcomes the low efficacy of gemcitabine therapy in pancreatic cancer. Nanomedicine-uk, 2011; 7 (6): 841-849.